| lncRNA loci | : ID of putative lncRNAs | |
|---|---|---|
| Biotype | : Types of putative lncRNAs based on genomic location including (a) lincRNA, (b) lncNAT and (c) sense/intronic lncRNA | |
| - lincRNA | : LncRNA locating at intergenic region without protein coding genes overlapping | |
| - lncNAT | : LncRNA locating at intergenic region with protein coding genes overlapping in the opposite strand | |
| - Sense/intronic lncRNA | : LncRNA located at untranslated region or intron of protein coding gene | |
| Target gene ID | : Target gene ID in cassava genome version 6.1 based on Phytozome version 12 | |
| Relationship | : Relationship of putative lncRNA and its target genes based on cis- or trans- regulation including neighboring, direct binding to mRNA of target, and target mimicry for miRNA | |
| - Cis-regulation | : Target prediction based on genomic location of protein coding gene located within 10 Kb. in up or downstream of putative lncRNA | |
| - Trans-regulation 1 | : Target prediction based on sequence complementary and normalized binding free energy (ndG) < -0.1 of putative lncRNAs and mRNA of protein coding gene target using LncTar | |
| - Trans-regulation 2 | : Target prediction based on the same mature miRNA binding with mismatch ≤ 2 of putative lncRNA and mRNA of protein coding gene target using psRNATarget | |
| Condition | : Condition which was found relationship between putative lncRNA and target gene including cold and/or drought stress | |
| miRNA | : miRNA which was found to share binding region on putative lncRNA sequence and mRNA sequence of target gene |